toChimeraResId ( resid )

Take a Modeller residue id and convert it to a chimera one

run (
        args,
        progressCallback=None,
        **keywords,
        )

Run executable (default is first argument) with given arguments in a subprocess. If not in nogui mode, show a progress bar base on the number of files matching the given filepattern upto the maxcount.

resId ( residue,  strip=True )

Take a chimera residue and return the modeller residue id

convertSelection (
        sel,
        minLen=4,
        molecule=None,
        keepHet=False,
        keepNA=False,
        turnsOnly=True,
        )

Take a chimera selection and convert it to a list of Modeller residue pairs

ChimeraExtension.py

fillgaps.py

modelloops.py